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Recursion Partners with Genentech to Advance First Validated Neuro Target Discovered Through AI Map

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The 4.5 year, up-to-$12 billion artificial intelligence (AI) drug discovery collaboration of Recursion, Roche, and its Genentech subsidiary marked a milestone Wednesday when plans were announced for Recursion and Genentech to co-develop a neuroscience small molecule early discovery program based on the first validated target discovered through an AI map they created to find new targets in a long-challenging therapeutic area.

Genentech has exercised the collaboration’s first validated target option after accepting from Recursion a validation package for the target. That acceptance will trigger a $3 million milestone payment from the biopharma giants to Recursion. That latest payment raises to $216 million the total cash paid out by the biopharma giants to Recursion since the AI-based drug developer joined with the pharma giant and its subsidiary to launch their partnership in 2021.

For each program developed, Recursion can receive up to $300 million in payments tied to achieving development, commercialization, and net sales milestones, as well as tiered royalties up to high single digits per small molecule program. Roche and Genentech have committed to using Recursion’s platform to advance therapies in 40 programs that include “key areas” of neuroscience and an undisclosed gastrointestinal (GI)-oncology indication.

The companies are not disclosing what the target is, or what neuroscience disorders it has the potential to treat. Recursion does say, however, that it took the companies 15 months to go from initiation of target validation to a validation package.

The target’s significance, according to Recursion and its partners, rests in its potential to expand the universe of neuroscience treatments beyond the handful of familiar targets in the space.

While more than three billion people are affected by neurological conditions worldwide, only one in 40 neuroscience drugs to ever reach the clinic have been approved. Just 8.4% of neurology drug candidates that enter Phase I studies reach all the way to approval, according to a Clinical Development Success Rates 2006-2015, a study published by the Biotechnology Innovation Organization (BIO), BioMedTracker, and Amplion (acquired in 2022 by Science and Medicine Group or SMG).

“Finding new targets in neuroscience has historically been challenging, and this milestone highlights our ability to uncover novel biology in areas where conventional approaches have struggled,” Recursion CEO Najat Khan, PhD, said in a statement.

New tools

New hope for discovering and developing new neuroscience drugs, the companies say, is a result of new tools developed to study the mostly unexplored genome in living neurons.

Those new tools start with Recursion’s Data Factory, an end-to-end platform developed and perfected for more than a decade to create a repeatable, scalable system for generating biological data designed for AI models.

“We really took an approach to be unbiased in our full genome-wide scan of these opportunities to uncover new biology,” Christopher Winrow, PhD, Recursion’s vice president of neuroscience, told GEN.

Partnering with Roche and Genentech, Recursion built the first whole-genome CRISPR knockout map generated from a subset of over one trillion internally manufactured neuronal cells derived from induced pluripotent stem cells (iPSCs)—about 12 brains’ worth of neurons—after outside cell manufacturers told the partners that the scale of production they were seeking was too difficult and too expensive to carry out.

“The cell context is important. We’re starting with human iPSCs and driving these into a very clearly homogenous population of neurons that we can test—and we do this at scale,” Winrow said. “You need a certain differentiation period for the iPSCs to form into the neurons that you want to study. There’s also a certain QC [quality control] that you need to do to make sure that those neurons are what we expect them to be, and that that’s robust and reproducible.”

Recursion subjected the potential targets they identified to what the company said was a rigorous validation process developed jointly with Genentech. Candidate targets advanced through successive stages of pathway validation, functional validation, and disease validation to determine whether modulating the target altered neurological disease phenotype. Only targets that consistently showed compelling evidence across

each stage advanced into a validation package.

Researchers from Recursion and Genentech applied a large-scale perturbation set using whole-genome CRISPR-Cas9 knockouts spanning more than 17,000 genes and thousands of small molecules. “You look for what we would call gene-compound interactions, to uncover some of those insights, at the same time as looking at the gene-gene interactions,” Winrow said.

“We’re looking at whole genome-wide knockout, not just a handful of areas or pathways of interest. That’s really a big game changer, in that we have this broad view,” he added. “As we perturb the cells, we start to see the known actors. But more importantly, we’re starting to see these unexplored areas really come to light. So that’s what’s changed, taking that broad view at a genome-wide level with the scale and throughput that we have at Recursion.”

46M+ images

With the cells produced and perturbations added in, the next step entails imaging designed to capture more than 46 million cellular images. Each image is analyzed across hundreds of features such as mitochondrial shape, nuclear morphology, using AI foundational models.

“What even is more mind-blowing beyond that is there are multiple features within each of those images,” Winrow said. “Traditionally as a scientist, I’d go in and I’m really interested in mitochondria. So, I look at the image and I say ‘Wow, am I seeing mitochondrial fragmentation?’ Well, that’s great. Yes, I am, right?’ But if you’re looking at hundreds and hundreds of different features, that could be a mitochondrial shape, it could be nuclear capacity, it could be a whole bunch of different things that the AI models are trained upon, that then enables a real richness to come out of that dataset.”

“So, it’s not just the scale of those images, it’s actually what’s within those images that we require the AI approaches to really uncover,” Winrow added.

The resulting data is analyzed to identify patterns resembling disease biology using Recursion’s BioHive-2 supercomputer, completed in 2024 based on Nvidia technology and proprietary AI models. Those insights are then turned into hypotheses that govern further research and ultimately, validated targets.

“Each target is individual. They are related to a core disease process,” Winrow said. “We have these core areas of biology that are looked at by a lot of different groups. We want to understand the unexplored biology around those areas, and that can be anything. It’s an unbiased approach, so all of those things that are associated have not necessarily been connected to this target in the past, so you come up with all sorts of different targets.

“Validation, then, is central to that core biology in exploring a whole bunch of different new intersecting targets,” he added.

Next steps

Next steps for the partners include advancing the discovery program from a target into a drug, using Recursion’s chemistry platform to design a potential first-in-class molecule—as well as identifying and validating additional targets for potential new programs.

Recursion said it will continue to combine its phenomics dataset with Genentech’s proprietary transcriptomics data to build additional multimodal maps designed to explore potential novel targets and pathways by systematically linking gene perturbations to cellular phenotypes.

The neuronal map is one of two whole genome neuroscience phenomaps produced by the Recursion-Roche-Genentech partnership. The other is a map of specialized microglial immune cells unveiled last year, which the companies also plan to use toward revealing significant new targets in neurodegenerative diseases.

“This provides us really two distinct but CNS-focused maps that are rooted in human biology. I think the opportunities are there to really mine both of those. The neuro map is a little bit ahead, and so we’ve been able to take some of the learnings that we gained there and apply that to our work on the microglia side as well.”

The two neuro-focused maps, in turn, are among six total whole genome phenomaps produced by the companies; the other four are designed to discover targets for a single undisclosed indication in GI oncology. The maps are designed to allow Recursion, Roche, and Genentech to explore potential undiscovered targets and pathways, systematically linking gene perturbations to cellular phenotypes.

“Because we can reuse these maps again and again, I might find something in the microglia map that’s really intriguing that I can now follow up in in the neuron map, and vice versa,” Winrow commented. “I think that’s a real power of this approach as well.”

The post Recursion Partners with Genentech to Advance First Validated Neuro Target Discovered Through AI Map appeared first on GEN – Genetic Engineering and Biotechnology News.

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Takeda approval ushers in new wave of sleep drugs

An FDA nod mostly clears the way for Orzeyful to enter, by Wall Street estimates, a multibillion-dollar market for drugs that boost “orexin” proteins.

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An FDA nod mostly clears the way for Orzeyful to enter, by Wall Street estimates, a multibillion-dollar market for drugs that boost “orexin” proteins.

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Tau Protein Linked to Mitochondrial Reverse Electron Transport in Preclinical Models

Tau Protein Linked to Mitochondrial Reverse Electron Transport in Preclinical Models

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Studies by researchers at Stanford University School of Medicine and at the University of California, San Francisco, have found that the protein tau, which is implicated in neurodegenerative disorders including Alzheimer’s disease, may be linked to these such disorders in a way that differs greatly from the pathological pathway usually ascribed to it.

Hyperphosphorylation and aggregation of tau are hallmarks of primary and secondary tauopathies including frontotemporal dementia (FTD) and AD, and potentially also Huntington’s disease and Parkinson’s disease. Such disorders also share another common pathology, which is deteriorating performance of the cell’s mitochondria. The powerhouses may number in the dozens or in the tens of thousands within a single cell, depending on the cell type’s energy needs. Nerve cells have especially high mitochondria demand.

To date the connection between tau and mitochondrial pathologies has been unclear. Working in cells and in preclinical animal models, the Stanford and UCSF scientists have now shown that phosphorylated tau can enter mitochondria and interfere with the electron transport chain, initiating a vicious cycle of pathological events and triggering reverse electron transport (RET) and the detriments that ensue.

“This is the first demonstration of exactly what tau does inside mitochondria,” said Bingwei Lu, PhD, Stanford professor of pathology, “Our discovery of a whole new mechanism driving tauopathies renders these disorders amenable to new therapeutic interventions.” Lu is senior author of the researchers’ published paper in Neuron, titled “Tau-induced mitochondrial reverse electron transport drives neurodegeneration,” in which they concluded “Our results suggest that RET may serve as a common pathogenic mechanism linking tau abnormalities to mitochondrial dysfunction across diseases.”

Tau is a soluble protein enriched in neuronal axons but is also found in neuronal dendrites, cell bodies, and non-neuronal cells, the authors explained in their report. Tau is also increasingly viewed as one of the strongest instigators of Alzheimer’s disease.  The appearance of telltale forms of the protein in cerebrospinal fluid or in the bloodstream strongly predicts impending Alzheimer’s symptoms. Neuroimaging studies and postmortem inspections indicate the presence of neurofibrillary tangles—long filaments largely composed of tau—inside Alzheimer’s patients’ nerve cells.

Neurofibrillary tangles and other aspects of tau’s misbehavior—notably, a tendency to rack up chemical modifications that shift that protein’s disposition—have been reported in Parkinson’s disease and Huntington’s diseases and in other tauopathies such as frontotemporal dementia and progressive supranuclear palsy. “Tau is phosphorylated at many sites under normal conditions but becomes hyperphosphorylated in disease,” the team also commented.

Tauopathies share another common pathology, which is deteriorating mitochondrial performance. “Mitochondrial dysfunction is also a common feature of tauopathies,” the investigators stated. “The mechanistic link between tau abnormalities and mitochondrial dysfunction and its relationship to the physiological function of tau, however, is unclear.”

In its healthier manifestation, tau is believed to play a role in stabilizing microtubules, skeletal structures in nerve cells that are critical to these cells’ proper operation. Tau molecules do indeed spend some of their time sitting on microtubules, straddling those structures’ identical subunits. So, not unreasonably, the consensus is that tau’s perch on microtubules helps keep them from falling apart.

The newly discovered pathological pathway is entirely independent of both neurofibrillary tangle formation and microtubule instability. Instead, it involves a switch in the directionality of mitochondria’s energy-production line, with a resulting disruption of mitochondria’s primary function, that being the conversion of calories from glucose or fat to energy by the electron-transport chain. This multiple-component complex passes electrons from one to the next of its components, the last of which converts a precursor molecule into ATP, the cell’s universal energy currency.

The new study shows that when the hyperphosphorylated tau molecule interacts with a key mitochondrial component it jams up the electron transport conveyor belt, causing electrons to flow backward. Aptly named reverse electron transport (RET), this snarl produces large amounts of reactive oxygen species (ROS), with accompanying inflammation and damage to proteins.

Reverse electron transport is an area of intense recent interest in biology. Although it was first discovered in the 1960s, there’s still no clear evidence that it serves any constructive physiological role. “In healthy cells, very little reverse electron transport is happening,” Lu said.

The new study shows that reverse electron transport is activated under stress. It may initially serve some beneficial function—for example, providing short-term adaption to that stress—but nothing like that has been proven. “Here, we demonstrate that tau regulates mitochondrial reverse electron transport (RET), which produces excess reactive oxygen species (ROS), reduces the NAD+/NADH ratio, and is activated by aging or stress,” the investigators noted.

The team carried out an extensive series of experiments in fruit flies, mice, human brain tissue and cultured human nerve cells that in some cases contained mutated genes for tau identical to those found in tauopathy patients. They also employed lab-generated nerve cells carrying a well-studied gene duplication that promotes accelerated acquisition of Alzheimer’s disease.

Through their studies they demonstrated that reverse electron transport was occurring in animal models of tauopathy as well as in tauopathy-afflicted human brain tissues. Healthy nerve cells, largely spared of hyperphosphorylated tau’s malevolent presence, showed no sign of reverse electron transport or its downside effects.

Next, the investigators showed how reverse electron transport is activated, finding that tau molecules enter mitochondria, but only when they’re phosphorylated. There, they can bind to a component of the electron-transport chain called NDUSF3, warping that protein’s shape. When this happens, electrons drop off the conveyor belt and start flowing backward. “Mechanistically, tau enters mitochondria and directly interacts with the complex I subunit NDUFS3 to promote RET in a phosphorylation-dependent manner,” they continued. “Elevated RET further drives tau hyperphosphorylation, establishing a self-perpetuating pathological loop.”

Studies showed that genetically or pharmacologically depleting tau halted this defection. An experimental drug called CPT prevented hyperphosphorylated tau from binding to NDUSF3, blocking reverse electron transport without impairing normal electron flow. Experimental animals that were genetically altered to produce no or little tau, suffered none of the cognitive or other behavioral deficits or brain pathophysiology exhibited by tau-producing, but otherwise genetically identical animals under stress conditions. “In flies, mice, and human induced pluripotent stem cell (hiPSC)-derived neurons, tau depletion eliminates stress-induced RET and confers resilience,” the authors stated.

Deleting the gene for tau, for instance, protected fruit flies from the severe, life-shortening nervous-system damage that normally results from prolonged exposure to elevated temperatures. CPT treatment of the tau-producing normal flies not only protected them against heat stress but extended their lifespan.

The study showed equivalent findings in mic engineered to not produce tau. Cognition in these animals was protected by CPT treatment from the detrimental effect of heat stress. CPT also protected tau-producing normal mice subjected to heat stress.

Tau hyperphosphorylation proved critical for promoting reverse electron transport. Only tau molecules that had undergone particular phosphorylation events could get inside mitochondria, bind to NDUFS3, and induce reverse electron transport.

In tauopathy mice with severe cognitive deficiencies, an extended CPT regimen inhibited reverse electron transport in the brain mitochondria. This significantly improved the animals’ performance on a wide range of behavioral tests and prevented nerve-cell inflammation as well as several characteristic markers of neurodegeneration, such as diminished cortical thickness and total brain volumes.

“Crucially, therapeutic inhibition of RET mitigates tau-induced neurotoxicity in multiple models, without observable detrimental effects on normal animals,” the authors noted. “The RET inhibitor CPT effectively disrupts the pathological loop between RET and tau phosphorylation, ameliorating neurotoxicity across species. In fly and mouse models of tauopathy, CPT treatment rescues behavioral deficits, reduces neuroinflammation, and mitigates neurodegeneration.”

Reverse electron transport is a textbook example of a vicious circle, Lu said. The massive release of highly reactive chemicals dramatically boosts the odds that individual tau molecules will get hyperphosphorylated, leading to additional activation of reverse electron transport. “Once this gets started, it can become self-perpetuating,” he commented. Reverse-electron-transport inhibition holds promise as a therapeutical strategy for tauopathies and, potentially, other maladies characterized by aberrant tau phosphorylation and mitochondrial dysfunction, such as brain tumors, stroke and traumatic brain injuries, Lu suggested.

“RET regulation thus represents a previously unrecognized normal function of tau that becomes pathological in disease, providing a therapeutic target for various conditions characterized by tau abnormalities and mitochondrial dysfunction,” the authors stated in their paper. “These findings suggest that RET inhibition holds promise as a therapeutic strategy for not only tauopathies but potentially other brain diseases characterized by aberrant tau phosphorylation and mitochondrial dysfunction.”

Lu added, “The main results we observed in our animal models were also seen in patient brain tissues and in the laboratory generated nerve-cell models we derived from tauopathy-patients’ cells. This suggests that what we learned from this study is applicable to the human nervous system. In fly and mouse models of tauopathy, CPT treatment rescues behavioral deficits, reduces neuroinflammation and mitigates neurodegeneration. In hiPSC-derived neurons carrying pathogenic tau mutations, CPT protects against stress-induced cellular abnormalities.”

These are early days for this compound’s clinical development, he stated. “Much more work remains to be done before it can undergo clinical trials.” Lu is co-founder and sits on the advisory board of Cerapeut, a company that is developing CPT as a therapeutic drug for the treatment of neurodegenerative diseases.

The post Tau Protein Linked to Mitochondrial Reverse Electron Transport in Preclinical Models appeared first on GEN – Genetic Engineering and Biotechnology News.

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Erica Schwartz confirmed as next CDC director

Schwartz will step into an agency that has been without a permanent leader for almost a year amid RFK Jr.’s tumultuous tenure as HHS chief. 

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Schwartz will step into an agency that has been without a permanent leader for almost a year amid RFK Jr.’s tumultuous tenure as HHS chief. 

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